- Beetlejuice Beetlejuice
2024 Director
- Designing the Burtonesque
2024 Himself
- AGFA Mystery Mixtape #2: Later in L.A.
2020 (archive footage)
- The AGFA Mystery Mixtape Vault
2020 (archive footage)
- Dumbo
2019 Director
- Miss Peregrine's Home for Peculiar Children
2016 Director
- Houdini: The Untold Story
2016 Director
- Alice Through the Looking Glass
2016 Producer
- The Making of Big Eyes
2015 Himself
- Big Eyes
2014 Director
- Captain Sparky vs. The Flying Saucers
2013 Producer
- Men in Black 3
2012 Alien on TV Monitors (uncredited)
- Miniatures in Motion: Bringing Frankenweenie to Life
2012 Director
- Dark Shadows
2012 Director
- Frankenweenie
2012 Director
- Abraham Lincoln: Vampire Hunter
2012 Producer
- A Conversation with Danny Elfman & Tim Burton
2011 Producer
- Alice in Wonderland: Effecting Wonderland
2010 Himself
- Alice in Wonderland
2010 Director
- 9
2009 Producer
- Roy, The Toxic Boy
2008 Writer
- Sweeney Todd: The Demon Barber of Fleet Street
2007 Director
- Sicko
2007 Thanks
- Cinema16: American Short Films
2006 Director
- Charlie and the Chocolate Factory: Sweet Sounds
2005 Himself
- Charlie and the Chocolate Factory
2005 Director
- Corpse Bride
2005 Director
- Big Fish
2003 Director
- Planet of the Apes
2001 Director
- The World of Stainboy
2000 Director
- Sleepy Hollow
1999 Director
- Mars Attacks!
1996 Director
- James and the Giant Peach
1996 Producer
- Batman Forever
1995 Producer
- Conversations with Vincent
1994 Director
- Ed Wood
1994 Director
- Cabin Boy
1994 Producer
- The Nightmare Before Christmas
1993 Story
- Singles
1992 Brian
- Hoffa
1992 Corpse (uncredited)
- Batman Returns
1992 Director
- Edward Scissorhands
1990 Director
- Batman
1989 Director
- Beetlejuice
1988 Director
- Aladdin and His Wonderful Lamp
1986 Director
- The Jar
1986 Director
- Pee-wee's Big Adventure
1985 Director
- Frankenweenie
1984 Director
- Backstage at Disney
1983 Himself
- Hansel and Gretel
1983 Director
- Luau
1982 Director
- Vincent
1982 Director
- Doctor of Doom
1979 Director
- The Muppet Movie
1979 Additional Muppet Performer
- Stalk of the Celery Monster
1979 Director
- Surf Wars
1978 Animation
- King and Octopus
1978 Director
- 1997
1974 Director
- Tim's Dreams
1972 Director
- Prehistoric Caveman
1971 Director
- The Island of Doctor Agor
1971 Director
- Attack of the 50 Foot Woman
Director
